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Princeton University Metabolomics and Proteomics Database
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Welcome to the Princeton University Metabolomics and Proteomics Database project at the Lewis-Sigler Institute. This project, currently under development, attempts to model, store, and visualize the data produced by high-throughput mass spectroscopy analyses. For microarray-based assays, please visit the PUMA project. For high-throughput sequencing assays, please visit the HTSEQ project.

Princeton researchers and their collaborators should register for a database account. If you are a world user, and are just trying to reach viewable data (mostly compound information for the time-being), click here to activate a world session



PUMPD is a project within the Lewis-Sigler Institute for Integrative Genomics of Princeton University. Some PUMPD software was derived from microarray database software produced by both the PUMAdb and SMD projects.

Project Funding and Support: PUMPD is funded in part by both the National Institute of General Medical Sciences (NIGMS) [NIH grant P50 GM071508] and a recovery grant (No. 0941143) to Floudas, Garcia, and Rabinowitz entitled "MS-Omics Hub for Cyber-enabled Acceleration of Mass Spectrometry-based Metabolomics and Proteomics"

Chemical compounds were imported from BOCD, The BioCyc Open Chemical Database, whose content is licensed, and from
HMDB, The Human Metabolome Database: Wishart DS, Knox C, Guo AC, et al. HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res. 2009 37(Database issue):D603-610..

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.